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About the role
Flagship Pioneering is seeking a Bioinformatics Engineer to join the Scientific Cloud team within Flagship IT. This is a high-impact individual contributor role reporting into the Director, Scientific Cloud Engineering, embedded within the sub-team.
What they're looking for
- M.S. or Ph.D. in Bioinformatics, Computational Biology, Genomics, Computer Science, or a closely related field
- 7+ years of hands-on bioinformatics engineering experience, including production-grade pipeline development and deployment
- Deep expertise in genomic data types and file formats (FASTQ, BAM/CRAM, VCF, BED, HDF5, AnnData, etc.) and the computational tools used to process them
- Demonstrated experience building and operating cloud-native bioinformatics workflows (AWS preferred, Azure or GCP acceptable) using workflow managers such as Nextflow, Snakemake, or WDL
- Strong programming proficiency in Python and/or R, with experience in shell scripting for pipeline automation
- Familiarity with public genomic data repositories and the access/compliance frameworks that govern them (e.g., dbGaP, UK Biobank, TCGA)
More about this role
Flagship Pioneering is a life sciences innovation enterprise that invents and builds transformative companies. Since its founding in 2000, Flagship has originated more than 100 ventures, including Moderna, and has deployed over $4 billion toward scientific discovery. Our Scientific Cloud team is the connective tissue that powers data and technology infrastructure across Flagship's growing portfolio of companies.
About Scientific Cloud : Scientific Cloud is Flagship Pioneering's portfolio-facing IT organization, responsible for the cloud engineering, data and informatics engineering, research systems, lab systems, and vendor management capabilities that power Flagship's emerging companies. The team operates with a portfolio-first orientation — building durable, shared infrastructure that individual ventures can rely on at every stage of company formation and growth.
Flagship Pioneering is seeking a Bioinformatics Engineer to join the Scientific Cloud team within Flagship IT. This is a high-impact individual contributor role reporting into the Director, Scientific Cloud Engineering, embedded within the sub-team.
The Bioinformatics Engineer will own and operate Flagship's...
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